Full Text and Figure Display Improves Bioscience Literature
Search,
Anna Divoli, Michael Wooldridge, and Marti A. Hearst,
PLoS ONE 5(4): e9619, April 2010.
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BioText Search Engine: beyond abstract search,
Marti A. Hearst, Anna Divoli, Harendra Guturu, Alex Ksikes,
Preslav Nakov, Michael A. Wooldridge, and Jerry Ye,
Bioinformatics
23(16):2196-2197, 2007.
(Advance Access published on June 1, 2007.)
pdf
Exploring the efficacy of caption search for bioscience journal
search interfaces, Marti Hearst, Anna Divoli, Michael Wooldridge,
and Jerry Ye, in the proceedings of BioNLP
2007, ACL 2007 Workshop, Prague, Czech Republic.
pdf
Solving Relational Similarity Problems Using the Web as a
Corpus, Preslav Nakov and Marti A. Hearst, in the
Proceedings of ACL/HLT, 2008. pdf
poster
Evidence for Showing Gene/Protein Name Suggestions in Bioscience
Literature Search, Anna Divoli, Marti A. Hearst, and Michael
A. Wooldridge, in PSB
2008. pdf
Improved Statistical Machine Translation Using Monolingual Paraphrases. Preslav
Nakov. In Proceedings of the
European Conference on Artificial Intelligence (ECAI'08), Patras, Greece, 2008.
pdf
Paraphrasing Verbs for Noun Compound Interpretation. Preslav Nakov. In Proceedings of the
Workshop on Multiword Expressions (MWE'08), in conjunction with the
Language Resources and Evaluation conference, Marrakech, Morocco, 2008.
pdf
Improving English-Spanish Statistical Machine Translation: Experiments with Domain
Adaptation, Sentence-Level Paraphrasing, Tokenization, and Recasing, Preslav
Nakov. In Proceedings of the Third Workshop
on Statistical Machine Translation (WMT'08), in conjunction with ACL'2008.
pdf
Noun Compound Interpretation Using Paraphrasing Verbs: Feasibility Study, Preslav
Nakov. In Proceedings of the
13th International Conference on Artificial Intelligence: Methodology, Systems,
Applications (AIMSA'08), 2008.
pdf
Using the Web as an Implicit Training Set:
Application to Noun Compound Syntax and Semantics.
Preslav Nakov (PhD Dissertation, 2008),
Technical Report No. UCB/EECS-2007-173
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Multiple Alignment of Citation Sentences with Conditional Random
Fields and Posterior Decoding,
Ariel Schwartz, Anna Divoli and Marti Hearst, in the proceedings of
EMNLP-CoNLL-2007,
Pragh, Czech Republic, 2007.
pdf
Showing Figures and Captions in the Biotext Journal Search
Engine (Poster), Marti Hearst, Michael Wooldridge, Jerry Ye, and Anna
Divoli, in the Proceedings of ISMB/ECCB 2007, Vienna,
Austria. Poster pdf
Automating Creation of Hierarchical Faceted Metadata Structures
Emilia Stoica, Marti Hearst, and Megan Richardson, in the
proceedings of
NAACL-HLT, Rochester NY, April 2007. pdf
Posterior Decoding Methods for Optimization and Accuracy Control of
Multiple Alignments, Ariel Schwartz (PhD Dissertation, 2007),
Technical Report No. UCB/EECS-2007-39.
html abstract pdf
BioText Report for the Second BioCreAtIvE Challenge, Preslav Nakov
and Anna Divoli, in the Proceedings of BioCreAtIvE II Workshop, Madrid,
Spain, April 23-25, 2007. pdf
UCB System Description for the WMT 2007 Shared Task, Preslav Nakov and
Marti Hearst, in Proceedings of Second Workshop on Statistical Machine
Translation co-located with ACL-2007, Prague, June 23, 2007.
pdf
UCB System Description for SemEval Task #4, Preslav Nakov and Marti
Hearst, in the Proceedings of SemEval-2007 Workshop co-located with ACL-2007,
Prague, June 23-24, 2007.
pdf
SemEval-2007 Task 04: Classification of Semantic Relations between
Nominals, Roxana Girju, Preslav Nakov, Vivi Nastase, Stan
Szpakowicz, Peter Turney, Deniz Yuret, in the Proceedings of
SemEval-2007 Workshop co-located with ACL-2007, Prague, June 23-24,
2007. pdf
Using Verbs to Characterize Noun-Noun Relations, Preslav Nakov
and Marti Hearst, in the Proceedings of
the Twelfth International Conference on Artificial Intelligence:
Methodology, Systems, Applications
(AIMSA), Bulgaria, September 2006.
pdf
Predicting Gene Functions from Text Using a Cross-Species
Approach, Emilia Stoica and Marti Hearst, in the 2006
Pacific Biocomputing Symposium (PSB'06), Maui, HI. pdf
Summarizing Key Concepts Using Citation Sentences, Ariel
Schwartz and Marti Hearst, Proceedings of the BioNLP Workshop on
Linking Natural Language Processing and Biology (poster), at HLT-NAACL, 2006.
pdf
Biotext Team Report for the TREC 2006 Genomics Track,
Divoli et al., Proceedings of TREC 2006,
Gaithersburg, MD, November 2006.
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Extraction of semantic relations from bioscience text,
Barbara Rosario (PhD Dissertation), UC Berkeley, 2005.
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Multi-way Relation Classification: Application to Protein-Protein
Interaction, Barbara Rosario and Marti Hearst, in
HLT/EMNLP'05, Vancouver, 2005.
pdf
Using the Web as an Implicit Training Set: Application to Structural
Ambiguity Resolution, Preslav Nakov and Marti Hearst,
in
HLT/EMNLP'05, Vancouver, 2005.
pdf
A Study of Using Search Engine Page Hits as a Proxy for n-gram
Frequencies, Preslav Nakov and Marti Hearst,
in
RANLP'05, Borovets, Bulgaria, 2005
pdf
Search Engine Statistics Beyond the n-gram:
Application to Noun Compound Bracketing
Preslav Nakov and Marti Hearst,
in CoNLL-2005,
Ann Arbor, MI, 2005.
pdf
Scaling Up BioNLP:
Application of a Text Annotation Architecture to Noun Compound Bracketing,
Preslav Nakov, Ariel Schwartz, Brian Wolf, and Marti Hearst,
in ACL/ISMB BioLINK SIG 2005,
Detroit, MI, 2005.
pdf
Supporting Annotation Layers for Natural Language Processing,
Preslav Nakov, Ariel Schwartz, Brian Wolf, and Marti Hearst,
in
ACL'05 Poster/Demo Track, Ann Arbor, MI, 2005.
pdf
Classifying Semantic Relations in Bioscience Text, Barbara Rosario and
Marti Hearst, in ACL'04, Barcelona,
2004. pdf
Citances: Citation Sentences for Semantic Analysis of Bioscience Text,
Preslav Nakov, Ariel Schwartz, and Marti Hearst, in
the SIGIR'04 workshop on
Search and Discovery in Bioinformatics.
pdf
BioText Team Experiments for the TREC 2004 Genomics Track, Preslav Nakov,
Ariel S. Schwartz, Emilia Stoica, Marti A. Hearst, Proceedings of TREC 2004,
Gaithersburg, MD, 2005. pdf
Tools for loading Medline into a local relational database
Diane E. Oliver, Gaurav Bhalotia, Ariel S. Schwartz, Russ B. Altman, Marti
A. Hearst, BMC Bioinformatics 2004, (7Oct2004)
Available at BioMedCentral
Nearly-Automated Metadata Hierarchy Creation, Emilia Stoica and Marti
Hearst, in
HLT-NAACL'04, Companion Volume, Boston, May 2004.
pdf
BioText Team Report for the
TREC 2003 Genomics Track, Gaurav Bhalotia,
Preslav Nakov, Ariel S. Schwartz, Marti A. Hearst,
Proceedings of
TREC 2003, Gaithersburg, MD, pdf
Category-based Pseudowords,
Preslav Nakov and Marti Hearst,
in the Companion Volume of the Proceedings of HLT-NAACL'03,
Edmonton, Canada, May 2003.
pdf
A Simple Algorithm for Identifying
Abbreviation Definitions in Biomedical Text,
Ariel Schwartz and Marti Hearst,
in the proceedings of the Pacific Symposium on Biocomputing
(PSB 2003) Kauai, Jan 2003.
pdf
The Descent of Hierarchy, and Selection in Relational Semantics
Barbara Rosario, Marti Hearst, and Charles Fillmore, in
ACL-02, July, 2002. pdf
ps
Classifying the Semantic Relations in Noun Compounds
via a Domain-Specific Lexical Hierarchy,
Barbara Rosario and Marti Hearst, in the Proceedings of
EMNLP '01, Pittsburgh, PA, June 2001.
pdf ps
Untangling Text Data Mining, Marti Hearst, Proceedings of
ACL'99, the 37th Annual Meeting of the Association for Computational Linguistics,
University of Maryland, June 20-26, 1999.
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